Gut tests: which ones are worth it?
Which gut tests are backed by guidelines?
Celiac blood test (tTG-IgA plus total IgA)
Guideline-backedWhat it can tell you
Whether celiac disease is likely. Total IgA is checked because low IgA can cause a false negative.
What it can't tell you
Non-celiac gluten sensitivity. The test is unreliable if you've already cut out gluten.
Source: Source 1, 2
Fecal calprotectin
Guideline-backed(for diarrhea-type symptoms)
What it can tell you
Whether there's inflammation in the bowel, helping separate inflammatory bowel disease from IBS-type symptoms.
What it can't tell you
IBS or endometriosis. Anti-inflammatory painkillers (NSAIDs), commonly used for endometriosis pain, can raise it.
Source: Source 1, 3
Blood count and CRP
Guideline-backedWhat it can tell you
Anemia (a red flag, or a sign of celiac disease or heavy periods) and general inflammation.
What it can't tell you
The cause of gut symptoms. Guidelines disagree about how useful CRP is here.
Source: Source 1, 3
Stool test for Giardia
Useful in specific situationsWhat it can tell you
A common, treatable parasite in ongoing diarrhea.
What it can't tell you
Much in a general parasite screen without travel or exposure risk — the American Gastroenterological Association advises against routine ova and parasite testing without that risk.
Source: Source 4
H. pylori breath or stool test
Guideline-backed(for upper-abdominal symptoms)
What it can tell you
A treatable cause of upper-belly pain or fullness.
What it can't tell you
Anything about lower-bowel or IBS symptoms. Some medicines (acid reducers, antibiotics) need to be paused beforehand — ask your clinician.
Source: Source 5
Which tests help only in specific situations?
Bile acid diarrhea testing
Useful in specific situationsWhat it can tell you
A treatable cause of chronic watery diarrhea, especially after gallbladder removal or with nighttime diarrhea.
What it can't tell you
Much in typical IBS.
Source: Source 3, 4
Lactose breath test
Useful in specific situationsWhat it can tell you
Lactose malabsorption.
What it can't tell you
Much that a simple diet trial wouldn't — UK guidelines see no role for breath tests in typical IBS.
Source: Source 3, 6
SIBO breath test (glucose or lactulose)
Limited evidenceWhat it can tell you
A possible sign of bacterial or methane-producing overgrowth.
What it can't tell you
A reliable diagnosis. Accuracy varies widely compared with direct sampling, and the lactulose version is known for false positives. The US guideline's suggestion to test is based on very low-quality evidence; UK guidelines advise against it in IBS.
Source: Source 3, 6, 7
Gastric emptying study
Useful in specific situationsWhat it can tell you
Gastroparesis, when more than 10% of a test meal remains after 4 hours.
What it can't tell you
Much in typical indigestion — most people with those symptoms have normal emptying. Some medications, including opioids and GLP-1 drugs, affect results.
Source: Source 8
Anorectal manometry with balloon expulsion
Useful in specific situationsWhat it can tell you
Pelvic floor dyssynergia — when the muscles don't coordinate to empty the bowel. It's treatable with biofeedback.
What it can't tell you
Endometriosis or hEDS — but it's worth asking about if you have either and struggle with straining or incomplete emptying.
Source: Source 1
Which gut tests aren't validated?
Stool microbiome panels (e.g., GI-MAP, GI Effects, Viome)
Not validated / not recommendedWhat it can tell you
A research-style description of gut bacteria.
What it can't tell you
Anything shown to improve care. A 2025 international consensus found insufficient evidence for routine use and said reports shouldn't include treatment advice.
Source: Source 9
IgG food sensitivity panels
Not validated / not recommendedWhat it can tell you
Which foods you eat — IgG reflects exposure.
What it can't tell you
Intolerance or allergy. Allergy societies and the British Society of Gastroenterology advise against IgG-based diets.
Source: Source 3, 10
Zonulin
Not validated / not recommendedWhat it can tell you
Nothing reliable — a widely used commercial kit was shown not to detect the protein identified as zonulin.
Source: Source 11
Lactulose-mannitol "leaky gut" test
Limited evidence(research use only)
What it can tell you
Intestinal permeability in research studies.
What it can't tell you
Anything with an agreed clinical cutoff or treatment plan.
Urine organic acid "dysbiosis markers" and Candida antibody tests
Not validated / not recommendedWhat it can tell you
No published evidence validates them for diagnosing gut problems. "Candida overgrowth" isn't an established diagnosis.
What sources does this page use?
- Lacy BE, et al. ACG clinical guideline: management of irritable bowel syndrome. Am J Gastroenterol. 2021;116(1):17–44.
- Rubio-Tapia A, et al. ACG clinical guidelines: diagnosis and management of celiac disease. Am J Gastroenterol. 2023;118(1):59–76.
- Vasant DH, et al. British Society of Gastroenterology guidelines on the management of irritable bowel syndrome. Gut. 2021;70(7):1214–1240.
- Smalley W, et al. AGA clinical practice guidelines on the laboratory evaluation of functional diarrhea and diarrhea-predominant IBS. Gastroenterology. 2019;157(3):851–854.
- Moayyedi PM, et al. ACG and CAG clinical guideline: management of dyspepsia. Am J Gastroenterol. 2017;112(7):988–1013.
- NICE. Irritable bowel syndrome in adults (CG61). https://www.nice.org.uk/guidance/cg61
- Pimentel M, et al. ACG clinical guideline: small intestinal bacterial overgrowth. Am J Gastroenterol. 2020;115(2):165–178.
- Camilleri M, et al. ACG clinical guideline: gastroparesis. Am J Gastroenterol. 2022;117(8):1197–1220.
- Porcari S, et al. International consensus statement on microbiome testing in clinical practice. Lancet Gastroenterol Hepatol. 2025;10(2):154–167. doi:10.1016/S2468-1253(24)00311-X
- Carr S, et al. CSACI position statement on the testing of food-specific IgG. Allergy Asthma Clin Immunol. 2012;8:12.
- Scheffler L, Crane A, Heyne H, et al. Widely used commercial ELISA does not detect precursor of haptoglobin2, but recognizes properdin as a potential second member of the zonulin family. Front Endocrinol. 2018;9:22. doi:10.3389/fendo.2018.00022
How should I cite this page?
Niehaus L. Gut tests: which ones are worth it?. The Lily Perspective. Published October 2026. Updated October 2026. https://lilyperspective.com/toolkit/lab-tests/gut-symptoms
© 2026 Lily Niehaus. All rights reserved. You're welcome to link to this page or quote short passages with credit to The Lily Perspective.
