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Gut tests: which ones are worth it?

Which gut tests are backed by guidelines?

Celiac blood test (tTG-IgA plus total IgA)

Guideline-backed

What it can tell you

Whether celiac disease is likely. Total IgA is checked because low IgA can cause a false negative.

What it can't tell you

Non-celiac gluten sensitivity. The test is unreliable if you've already cut out gluten.

Source: Source 1, 2

Fecal calprotectin

Guideline-backed

(for diarrhea-type symptoms)

What it can tell you

Whether there's inflammation in the bowel, helping separate inflammatory bowel disease from IBS-type symptoms.

What it can't tell you

IBS or endometriosis. Anti-inflammatory painkillers (NSAIDs), commonly used for endometriosis pain, can raise it.

Source: Source 1, 3

Blood count and CRP

Guideline-backed

What it can tell you

Anemia (a red flag, or a sign of celiac disease or heavy periods) and general inflammation.

What it can't tell you

The cause of gut symptoms. Guidelines disagree about how useful CRP is here.

Source: Source 1, 3

Stool test for Giardia

Useful in specific situations

What it can tell you

A common, treatable parasite in ongoing diarrhea.

What it can't tell you

Much in a general parasite screen without travel or exposure risk — the American Gastroenterological Association advises against routine ova and parasite testing without that risk.

Source: Source 4

H. pylori breath or stool test

Guideline-backed

(for upper-abdominal symptoms)

What it can tell you

A treatable cause of upper-belly pain or fullness.

What it can't tell you

Anything about lower-bowel or IBS symptoms. Some medicines (acid reducers, antibiotics) need to be paused beforehand — ask your clinician.

Source: Source 5

Which tests help only in specific situations?

Bile acid diarrhea testing

Useful in specific situations

What it can tell you

A treatable cause of chronic watery diarrhea, especially after gallbladder removal or with nighttime diarrhea.

What it can't tell you

Much in typical IBS.

Source: Source 3, 4

Lactose breath test

Useful in specific situations

What it can tell you

Lactose malabsorption.

What it can't tell you

Much that a simple diet trial wouldn't — UK guidelines see no role for breath tests in typical IBS.

Source: Source 3, 6

SIBO breath test (glucose or lactulose)

Limited evidence

What it can tell you

A possible sign of bacterial or methane-producing overgrowth.

What it can't tell you

A reliable diagnosis. Accuracy varies widely compared with direct sampling, and the lactulose version is known for false positives. The US guideline's suggestion to test is based on very low-quality evidence; UK guidelines advise against it in IBS.

Source: Source 3, 6, 7

Gastric emptying study

Useful in specific situations

What it can tell you

Gastroparesis, when more than 10% of a test meal remains after 4 hours.

What it can't tell you

Much in typical indigestion — most people with those symptoms have normal emptying. Some medications, including opioids and GLP-1 drugs, affect results.

Source: Source 8

Anorectal manometry with balloon expulsion

Useful in specific situations

What it can tell you

Pelvic floor dyssynergia — when the muscles don't coordinate to empty the bowel. It's treatable with biofeedback.

What it can't tell you

Endometriosis or hEDS — but it's worth asking about if you have either and struggle with straining or incomplete emptying.

Source: Source 1

Which gut tests aren't validated?

Stool microbiome panels (e.g., GI-MAP, GI Effects, Viome)

Not validated / not recommended

What it can tell you

A research-style description of gut bacteria.

What it can't tell you

Anything shown to improve care. A 2025 international consensus found insufficient evidence for routine use and said reports shouldn't include treatment advice.

Source: Source 9

IgG food sensitivity panels

Not validated / not recommended

What it can tell you

Which foods you eat — IgG reflects exposure.

What it can't tell you

Intolerance or allergy. Allergy societies and the British Society of Gastroenterology advise against IgG-based diets.

Source: Source 3, 10

Zonulin

Not validated / not recommended

What it can tell you

Nothing reliable — a widely used commercial kit was shown not to detect the protein identified as zonulin.

Source: Source 11

Lactulose-mannitol "leaky gut" test

Limited evidence

(research use only)

What it can tell you

Intestinal permeability in research studies.

What it can't tell you

Anything with an agreed clinical cutoff or treatment plan.

Urine organic acid "dysbiosis markers" and Candida antibody tests

Not validated / not recommended

What it can tell you

No published evidence validates them for diagnosing gut problems. "Candida overgrowth" isn't an established diagnosis.

What sources does this page use?

  1. Lacy BE, et al. ACG clinical guideline: management of irritable bowel syndrome. Am J Gastroenterol. 2021;116(1):17–44.
  2. Rubio-Tapia A, et al. ACG clinical guidelines: diagnosis and management of celiac disease. Am J Gastroenterol. 2023;118(1):59–76.
  3. Vasant DH, et al. British Society of Gastroenterology guidelines on the management of irritable bowel syndrome. Gut. 2021;70(7):1214–1240.
  4. Smalley W, et al. AGA clinical practice guidelines on the laboratory evaluation of functional diarrhea and diarrhea-predominant IBS. Gastroenterology. 2019;157(3):851–854.
  5. Moayyedi PM, et al. ACG and CAG clinical guideline: management of dyspepsia. Am J Gastroenterol. 2017;112(7):988–1013.
  6. NICE. Irritable bowel syndrome in adults (CG61). https://www.nice.org.uk/guidance/cg61
  7. Pimentel M, et al. ACG clinical guideline: small intestinal bacterial overgrowth. Am J Gastroenterol. 2020;115(2):165–178.
  8. Camilleri M, et al. ACG clinical guideline: gastroparesis. Am J Gastroenterol. 2022;117(8):1197–1220.
  9. Porcari S, et al. International consensus statement on microbiome testing in clinical practice. Lancet Gastroenterol Hepatol. 2025;10(2):154–167. doi:10.1016/S2468-1253(24)00311-X
  10. Carr S, et al. CSACI position statement on the testing of food-specific IgG. Allergy Asthma Clin Immunol. 2012;8:12.
  11. Scheffler L, Crane A, Heyne H, et al. Widely used commercial ELISA does not detect precursor of haptoglobin2, but recognizes properdin as a potential second member of the zonulin family. Front Endocrinol. 2018;9:22. doi:10.3389/fendo.2018.00022

How should I cite this page?

Niehaus L. Gut tests: which ones are worth it?. The Lily Perspective. Published October 2026. Updated October 2026. https://lilyperspective.com/toolkit/lab-tests/gut-symptoms

© 2026 Lily Niehaus. All rights reserved. You're welcome to link to this page or quote short passages with credit to The Lily Perspective.

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